Stand Alone Analyses

In addition to the standard analyses that ship with HyPhy, other stand alone analyses are available here.

These analyses include:

• Ancestral Sequence Reconstruction
• Standard MG94 Fit
• Fit Multiple Hit Models
• Codon Models with Multiple Classes of Synonymous Codons
• Simulate Codon Data with MG94 Models
• Codon-aware MSA
• And new analyses regularly added. check the github repository for the latest.