Resources

• HyPhy Vision on YouTube

• Current HyPhy selection analyses output JSON-formatted files, whose contents are documented here.

• Book chapters and Powerpoints detailing HyPhy usage:

  • Quantifying Natural Selection in Coding Sequences (2016)
  • Getting Started with HyPhy
  • HyPhy Book: Estimating selection pressures on alignments of coding sequences (2007)
  • Introduction: Compartmentalization Detection
  • A comprehensive selection analysis tutorial (2017)

• Getting help

  • See the current Github Issues page for posting questions or searching queries from other users.